Starting an EDA on the mult_wave part of the citizen_shield project and looking into a bunch of networks linking the determinants with the least amount of missing data
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James Twose
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# Minimal makefile for Sphinx documentation
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echo.
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goto end
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%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
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sphinx>=4.4.0
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{
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"path": "../../citizen_shield/citizen_shield_demographics_classification.ipynb"
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}
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{
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"path": "../../citizen_shield/citizen_shield_demographics_clustering.ipynb"
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}
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# Configuration file for the Sphinx documentation builder.
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#
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# This file only contains a selection of the most common options. For a full
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# list see the documentation:
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# https://www.sphinx-doc.org/en/master/usage/configuration.html
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# -- Path setup --------------------------------------------------------------
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# If extensions (or modules to document with autodoc) are in another directory,
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# add these directories to sys.path here. If the directory is relative to the
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# documentation root, use os.path.abspath to make it absolute, like shown here.
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#
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import os
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import sys
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import sphinx_bootstrap_theme
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sys.path.insert(0, os.path.abspath("../../"))
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# -- Project information -----------------------------------------------------
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project = 'Matti Jms Collabs'
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copyright = '2022, James Twose, Matti Heino'
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author = 'James Twose, Matti Heino'
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# -- General configuration ---------------------------------------------------
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# Add any Sphinx extension module names here, as strings. They can be
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# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
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# ones.
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extensions = ["sphinx.ext.duration",
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"sphinx.ext.doctest",
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"sphinx.ext.autodoc",
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"sphinx.ext.autosummary",
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"sphinx.ext.mathjax",
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"sphinx.ext.viewcode",
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"numpydoc",
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"nbsphinx",
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"nbsphinx_link",
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"sphinx_gallery.load_style",
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]
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# Add any paths that contain templates here, relative to this directory.
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templates_path = ['_templates']
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# List of patterns, relative to source directory, that match files and
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# directories to ignore when looking for source files.
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# This pattern also affects html_static_path and html_extra_path.
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exclude_patterns = ["_build", "**.ipynb_checkpoints"]
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# -- Options for HTML output -------------------------------------------------
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# The theme to use for HTML and HTML Help pages. See the documentation for
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# a list of builtin themes.
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#
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html_theme = "bootstrap"
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html_theme_path = sphinx_bootstrap_theme.get_html_theme_path()
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html_theme_options = {
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"source_link_position": "footer",
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"bootswatch_theme": "simplex",
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"navbar_title": "Matti and James Collaboration Code",
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"navbar_sidebarrel": False,
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"bootstrap_version": "3",
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"nosidebar": True,
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"body_max_width": "100%",
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"navbar_links": [
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# ("Gallery", "examples/index"),
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# ("Tutorial", "tutorial"),
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# ("Home", "index"),
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# ("API", "api"),
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],
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}
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# Add any paths that contain custom static files (such as style sheets) here,
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# relative to this directory. They are copied after the builtin static files,
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# so a file named "default.css" will overwrite the builtin "default.css".
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html_static_path = ['_static']
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# Add the 'copybutton' javascript, to hide/show the prompt in code
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# examples, originally taken from scikit-learn's doc/conf.py
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def setup(app):
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app.add_js_file("copybutton.js")
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app.add_css_file("css/custom.css")
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.. Matti Jms Collabs documentation master file, created by
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sphinx-quickstart on Tue Jun 28 20:18:11 2022.
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You can adapt this file completely to your liking, but it should at least
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contain the root `toctree` directive.
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Welcome to Matti Jms Collabs's documentation!
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=============================================
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.. toctree::
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:maxdepth: 2
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:caption: Contents:
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Citizen Shield
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----------------------------
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.. nbgallery::
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:caption: Example Notebooks
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:name: notebook-gallery
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:glob:
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citizen_shield_demographics_classification.ipynb
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citizen_shield_demographics_clustering.ipynb
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.. raw:: html
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<div id="content">
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<li><a href="../../../citizen_shield/citizen_shield_networks.nb.html">Citizen Shield Network Approach in R</a></li>
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</div>
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References
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^^^^^^^^^^^
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.. raw:: html
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<div id="content">
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<li>Borsboom, D., Deserno, M. K., Rhemtulla, M., Epskamp, S., Fried, E. I., McNally, R. J., ... & Waldorp, L. J. (2021).
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Network analysis of multivariate data in psychological science.
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<i>Nature Reviews Methods Primers, 1</i> (1), 1-18.
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<a href="https://www.nature.com/articles/s43586-021-00055-w.pdf"> Article Link</a></li>
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</div>
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Indices and tables
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==================
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* :ref:`genindex`
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* :ref:`modindex`
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* :ref:`search`
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